Tool Maximum Entropy Presence Prediction

References

Author: O.Conrad (c) 2015
Menu: Grid|Analysis|Macroecology

Parameters

	Name	Type	Identifier	Description	Constraints
Input	Presence Data	Shapes (input)	`PRESENCE`	-	-
	Numerical Features (*)	Grid list (optional input)	`FEATURES_NUM`	-	-
	Categorical Features (*)	Grid list (optional input)	`FEATURES_CAT`	-	-
Output	Presence Prediction	Grid (output)	`PREDICTION`	-	-
Output	Presence Probability	Grid (output)	`PROBABILITY`	-	-
Options	Grid system	Grid system	`PARAMETERS_GRID_SYSTEM`	-	-
	Background Sample Density [Percent]	Floating point	`BACKGROUND`	-	Minimum: 0.000000 Maximum: 100.000000 Default: 1.000000
	Method	Choice	`METHOD`	-	Available Choices: [0] Yoshimasa Tsuruoka [1] Dekang Lin Default: 0
	Load from File...	File path	`YT_FILE_LOAD`	-	-
	Save to File...	File path	`YT_FILE_SAVE`	-	-
	Regularization	Choice	`YT_REGUL`	-	Available Choices: [0] none [1] L1 [2] L2 Default: 1
	Regularization Factor	Floating point	`YT_REGUL_VAL`	-	Minimum: 0.000000 Default: 1.000000
	Real-valued Numerical Features	Boolean	`YT_NUMASREAL`	-	Default: 1
	Alpha	Floating point	`DL_ALPHA`	-	Default: 0.100000
	Threshold	Floating point	`DL_THRESHOLD`	-	Minimum: 0.000000 Default: 0.000000
	Maximum Iterations	Integer	`DL_ITERATIONS`	-	Minimum: 1 Default: 100
	Number of Numeric Value Classes	Integer	`NUM_CLASSES`	-	Minimum: 1 Default: 32
(*) optional

Command-line

Usage: saga_cmd imagery_maxent 1 [-PRESENCE <str>] [-FEATURES_NUM <str>] [-FEATURES_CAT <str>] [-PREDICTION <str>] [-PROBABILITY <str>] [-BACKGROUND <double>] [-METHOD <str>] [-YT_FILE_LOAD <str>] [-YT_FILE_SAVE <str>] [-YT_REGUL <str>] [-YT_REGUL_VAL <double>] [-YT_NUMASREAL <str>] [-DL_ALPHA <double>] [-DL_THRESHOLD <double>] [-DL_ITERATIONS <num>] [-NUM_CLASSES <num>]
  -PRESENCE:<str>       	Presence Data
	Shapes (input)
  -FEATURES_NUM:<str>   	Numerical Features
	Grid list (optional input)
  -FEATURES_CAT:<str>   	Categorical Features
	Grid list (optional input)
  -PREDICTION:<str>     	Presence Prediction
	Grid (output)
  -PROBABILITY:<str>    	Presence Probability
	Grid (output)
  -BACKGROUND:<double>  	Background Sample Density [Percent]
	Floating point
	Minimum: 0.000000
	Maximum: 100.000000
	Default: 1.000000
  -METHOD:<str>         	Method
	Choice
	Available Choices:
	[0] Yoshimasa Tsuruoka
	[1] Dekang Lin
	Default: 0
  -YT_FILE_LOAD:<str>   	Load from File...
	File path
  -YT_FILE_SAVE:<str>   	Save to File...
	File path
  -YT_REGUL:<str>       	Regularization
	Choice
	Available Choices:
	[0] none
	[1] L1
	[2] L2
	Default: 1
  -YT_REGUL_VAL:<double>	Regularization Factor
	Floating point
	Minimum: 0.000000
	Default: 1.000000
  -YT_NUMASREAL:<str>   	Real-valued Numerical Features
	Boolean
	Default: 1
  -DL_ALPHA:<double>    	Alpha
	Floating point
	Default: 0.100000
  -DL_THRESHOLD:<double>	Threshold
	Floating point
	Minimum: 0.000000
	Default: 0.000000
  -DL_ITERATIONS:<num>  	Maximum Iterations
	Integer
	Minimum: 1
	Default: 100
  -NUM_CLASSES:<num>    	Number of Numeric Value Classes
	Integer
	Minimum: 1
	Default: 32